Welcome to pyCyto’s Documentation!¶
pyCyto is a flexible and extensible Python-based workflow package designed for analyzing microscopic cytotoxicity assays. It enables researchers and bioimage analysts to build reproducible analysis pipelines using simple YAML configuration files. Key features include support for multi-channel images, integration with Dask for parallel processing, and a modular design covering preprocessing, segmentation, tracking, and postprocessing analysis.
This guide covers running pyCyto as a standalone Docker container with its web-based DAG editor — no cluster or Python environment setup required.