.. pyCyto public documentation master file.

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Welcome to pyCyto's Documentation!
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**pyCyto** is a flexible and extensible Python-based workflow package designed
for analyzing microscopic cytotoxicity assays. It enables researchers and
bioimage analysts to build reproducible analysis pipelines using simple YAML
configuration files. Key features include support for multi-channel images,
integration with Dask for parallel processing, and a modular design covering
preprocessing, segmentation, tracking, and postprocessing analysis.

This guide covers running pyCyto as a standalone Docker container with its
web-based DAG editor — no cluster or Python environment setup required.

.. toctree::
   :maxdepth: 2
   :caption: User Guide

   introduction
   pipeline
   docker-install
   webgui-quickstart
   containerized_execution

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Indices and Tables
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* :ref:`genindex`
* :ref:`search`